PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 60aa    MW: 5961.4 Da    PI: 4.3495
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.22.3e-084260119
            GATA  1 CsnCgttkTplWRrgpdgn 19
                    C+ Cgt  TplWR gp g+
  XP_009135503.1 42 CVDCGTLRTPLWRGGPAGP 60
                    ****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.14E-53560No hitNo description
PROSITE profilePS501149.6313660IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-63959IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MSEGSVESKS KVDSAGELSD VDNENCSGSG GGGSSGETKR TCVDCGTLRT PLWRGGPAGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.181471e-96root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893171e-93AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135503.13e-35PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB52e-24GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A078D5434e-27A0A078D543_BRANA; BnaA03g34330D protein
STRINGBra022184.1-P2e-24(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.19e-25GATA transcription factor 17