PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133259.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 490aa    MW: 54067.6 Da    PI: 8.3322
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.4e-33167224260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  +++++ei+Y+g+Hnh+k
  XP_009133259.1 167 EDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-EGQITEIVYKGSHNHPK 224
                     7****************************************.***************85 PP

2WRKY105.52.8e-33331389159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  XP_009133259.1 331 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASQDLRAVITTYEGKHNHD 389
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27155225IPR003657WRKY domain
SuperFamilySSF1182903.01E-24164225IPR003657WRKY domain
SMARTSM007741.0E-33166224IPR003657WRKY domain
PROSITE profilePS5081122.905167225IPR003657WRKY domain
PfamPF031067.2E-25167223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-37316391IPR003657WRKY domain
SuperFamilySSF1182904.45E-29323391IPR003657WRKY domain
PROSITE profilePS5081138.124326391IPR003657WRKY domain
SMARTSM007744.6E-38331390IPR003657WRKY domain
PfamPF031061.5E-25332389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAASSLLHID NNTTRQNMSG SANWSRRSSA SLEDLEIPNF RSFAPSSVSI SPSTCFSPSV  60
FLDSPAFVAS SANVLASPTT GALITNESNQ KNVTKEEKNN NINYFDFSFQ TQSSTLSAPT  120
TTATNSSIFQ AQEQERKNQS DQWSQTLNNS NTHQAVSYNV REQRKGEDGY NWRKYGQKQV  180
KGSENPRSYY KCTFPSCPTK KKVERSLEGQ ITEIVYKGSH NHPKPQSTRR SSSSSSSTFH  240
SAVFNASLDN SFSHSDSLAI QQDDNTTSGS VGDDEFERGS SVVSREEECG SEPEAKRWKG  300
ESETNGGNGN GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI  360
GCPVRKHVER ASQDLRAVIT TYEGKHNHDV PAARGSGYAT NRPVQDPSSA PIRPAAIAGH  420
TNYTTSSRPP YTLQMLQNNN NNTNAGPYGY AMNNNNNNLQ TQRNDFAGGF SRAKEEPNDE  480
SSSFLDSFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A4e-38167392878Probable WRKY transcription factor 4
1wj2_A4e-38167392878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.9951e-126flower| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9124030.0EU912403.1 Brassica napus WRKY33-1 transcription factor (WRKY33-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133259.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ8S8P50.0WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBLM4C7860.0M4C786_BRARP; Uncharacterized protein
STRINGBra000064.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45832755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.10.0WRKY DNA-binding protein 33