PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132961.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 528aa    MW: 57468.8 Da    PI: 6.3334
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.4e-0688108526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ff + G+C  G +C+F H+
  XP_009132961.1  88 PCKFFGQ-GWCDNGISCRFLHV 108
                     7******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.75183110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-583107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-488110IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MSDSDMDIDD DDVQVHVQRT IAGDSGLLLA KPSDSQSRND VKKHLDENSG KNNTMLGEAK  60
DMLLSRFPAP APSFPLVNGP EQKRASLPCK FFGQGWCDNG ISCRFLHVKE NMNGTSQQQW  120
GNHMAGTSGI QSVEGENGVA SLVNPSGGHE ILFVPSLGNM EMERGSLPKG GAVFTEDRPV  180
FVNSTSSFPL KSSFVQEHGA SITSYGQTDM GSSAPAWTGS LFSSTPMNQY ASKLGNCENM  240
NDKNGSGSLP MVQAISVSSV QDAEGDRTSN NKKVYSHDWE PSEPFRASFT IPPYILPSSD  300
ALYDPFTDIE NPQDRSLTAP LSSKGRYAQK KSSQQKDDES ASDNKNSSCS NNQYQESMAT  360
KNLEAHGVVE GVATSVVDQN DETTPSKEVS AENRSVLKRS KPAGHGSWRR SDGSSHQKVL  420
KSDERDGEAR SDAGTKAMRQ FRTAVVETIK EMVKPLWREG RLTKEVHNMV VKRASEKIVS  480
AAVQSHQVPT DSAFVDQYLS MSATKIVKLV EASLFLDTSV KKLSKVLH
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root and shoot apices and vasculature. {ECO:0000269|PubMed:16291783}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132961.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411460.0AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132962.20.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLM4E2F70.0M4E2F7_BRARP; Uncharacterized protein
STRINGBra022958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]