PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132957.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 468aa    MW: 50952.7 Da    PI: 7.058
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-063454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C+ff + G+C  G +C+F H+
  XP_009132957.1 34 PCKFFGQ-GWCDNGISCRFLHV 54
                    7******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-52953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7512956IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-43456IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLGEAKDMLL SRFPAPAPSF PLVNGPEQKR ASLPCKFFGQ GWCDNGISCR FLHVKENMNG  60
TSQQQWGNHM AGTSGIQSVE GENGVASLVN PSGGHEILFV PSLGNMEMER GSLPKGGAVF  120
TEDRPVFVNS TSSFPLKSSF VQEHGASITS YGQTDMGSSA PAWTGSLFSS TPMNQYASKL  180
GNCENMNDKN GSGSLPMVQA ISVSSVQDAE GDRTSNNKKV YSHDWEPSEP FRASFTIPPY  240
ILPSSDALYD PFTDIENPQD RSLTAPLSSK GRYAQKKSSQ QKDDESASDN KNSSCSNNQY  300
QESMATKNLE AHGVVEGVAT SVVDQNDETT PSKEVSAENR SVLKRSKPAG HGSWRRSDGS  360
SHQKVLKSDE RDGEARSDAG TKAMRQFRTA VVETIKEMVK PLWREGRLTK EVHNMVVKRA  420
SEKIVSAAVQ SHQVPTDSAF VDQYLSMSAT KIVKLVEGYV EKYGKPKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root and shoot apices and vasculature. {ECO:0000269|PubMed:16291783}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132957.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411460.0AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132957.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like
RefseqXP_009132962.20.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLM4E2F70.0M4E2F7_BRARP; Uncharacterized protein
STRINGBra022958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]