PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132745.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 338aa    MW: 38058.1 Da    PI: 10.3591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.7e-31272330360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  XP_009132745.1 272 DDYSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 330
                     99***********************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.6E-17221268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-33258330IPR003657WRKY domain
PROSITE profilePS5081130.481265331IPR003657WRKY domain
SuperFamilySSF1182901.12E-26268330IPR003657WRKY domain
SMARTSM007741.6E-36270330IPR003657WRKY domain
PfamPF031063.8E-26272329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LLSSRPHQQD HLYDMSLLSE TREAVFRFKR VANLLSSSSV  60
GHARFRRAKR PQTHLSQTIF LDPCLQRTEL TSSQKPPVVL RSDLSLGPVD SLTLGTRSFG  120
LNSNAKAPLL QLNQQQQQQL HERLQAHQQH QQRHQAEMML RKCNSGMSLS FDNSSCTTPT  180
MSSTRSFISS LSIDGSVNNS SSSFHLLGAP SSTDQSSQYS KRKCLMRGAD EHGSAKCGRS  240
SRCHCSKKRK HRVRRSIRVP AISNKVADIP PDDYSWRKYG QKPIKGSPYP RGYYKCSSIR  300
GCPARKHVER CLEDPAMLIV TYEAEHNHPK MPSQTVTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20258333276WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.70860.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132745.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300390.0KF430039.1 Brassica rapa WRKY transcription factor 21 (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513624.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-167WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM4E2080.0M4E208_BRARP; Uncharacterized protein
STRINGBra022808.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-94WRKY DNA-binding protein 21