PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132624.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 376aa    MW: 43722.5 Da    PI: 7.1904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05111135123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C    C+k F ++s LkrH   H
  XP_009132624.1 111 YVCDypGCDKKFMDSSKLKRHWLIH 135
                     89*******************9988 PP

2zf-C2H220.31.5e-06141165123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+   Cgk Fs   nL++H++tH
  XP_009132624.1 141 FVCTyqGCGKAFSLDFNLRSHMKTH 165
                     89**********************9 PP

3zf-C2H212.20.00055171196123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     + Cp   Cgk++   + Lk+H    H
  XP_009132624.1 171 HICPysGCGKRYAYEYKLKNHVAAyH 196
                     68*******************87666 PP

4zf-C2H213.50.00021235260123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   C+k + + + Lk H+++ H
  XP_009132624.1 235 YACPyeGCDKDYIHEYKLKLHLKReH 260
                     89*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1377108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01382106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.53382111IPR007087Zinc finger, C2H2
PROSITE patternPS00028084106IPR007087Zinc finger, C2H2
SuperFamilySSF576677.33E-985135No hitNo description
Gene3DG3DSA:3.30.160.601.8E-14109131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.528111140IPR007087Zinc finger, C2H2
SMARTSM003550.0014111135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113135IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-14122180No hitNo description
Gene3DG3DSA:3.30.160.602.4E-19132166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1E-4141165IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.757141170IPR007087Zinc finger, C2H2
PROSITE patternPS000280143165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-7167193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012171196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-8232257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.23E-5233260No hitNo description
PROSITE profilePS501578.85235265IPR007087Zinc finger, C2H2
SMARTSM003550.013235260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEQQYQYQNN PFERRPILKS SKASPSIRWI KDWVPQDIVA TGAKCYLRKW VTEETVKRLK  60
EKEKEPSTTD PDPPEPTSEI LFLCSYDGCG KIFFDVSALR KHSHIHGERQ YVCDYPGCDK  120
KFMDSSKLKR HWLIHTGARD FVCTYQGCGK AFSLDFNLRS HMKTHSQENY HICPYSGCGK  180
RYAYEYKLKN HVAAYHEKNG AGETPTYTPP AEKASRTPKT PSATVYGSAS LERPYACPYE  240
GCDKDYIHEY KLKLHLKREH LPQENNNNTP TKHDLEEGSD QDFYRKHASN GKSQTRRQQS  300
RAKPDMRTPP AKVLKKGPTS SPAKERMAKK PWQVRETFEG EDSEETEEDR ENVDDGWRFV  360
RNNEEEDDDE ETEDEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-35841958117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.69050.0leaf| root| silique
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411880.0AC241188.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH120G08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132624.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L30.0Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLM4EK690.0M4EK69_BRARP; Uncharacterized protein
STRINGBra029186.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-180C2H2 family protein