PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131389.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 259aa    MW: 29597.6 Da    PI: 9.4073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-0592114223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  Hi+  H
  XP_009131389.1  92 SCSVCSRVYPTSRLLSIHISEaH 114
                     6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0946489IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806689IPR007087Zinc finger, C2H2
SMARTSM00355591114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093114IPR007087Zinc finger, C2H2
SMARTSM003550.091129154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAMGMAELGF PYWNPLRRRF PPDSPFFASG NVERELLAKQ VALDFTEDEI NNLQIIVETE  60
SRRISCPIVG CPERLKSLDN FEDHYKARHT ASCSVCSRVY PTSRLLSIHI SEAHDSFFQA  120
KVARGYDMYE CLVEGCGLKF KNYKARHRHL VDKHKFPTTF EFFKRTQLSK KRREKLQKQR  180
VPKLKHEEDK EEASSEAMEV EDKASLDGLV SALSTLTTSD TTPSNVSFGR RHGRGLTFVP  240
RSVHREKPTN SSSTPGPKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131389.10.0PREDICTED: zinc finger protein 511
TrEMBLM4CPV10.0M4CPV1_BRARP; Uncharacterized protein
STRINGBra006240.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-165zinc ion binding;nucleic acid binding;zinc ion binding