PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130926.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 279aa    MW: 31877.8 Da    PI: 6.3181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.2e-3249155199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ltpsdv+k++rlv+pk++ae++        ++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+  D+v F+++++
  XP_009130926.1  49 FEKSLTPSDVGKLNRLVIPKQHAEKYfplntiisNNAEEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFFQRQRS 143
                     99*******************************9888899***************************************************9988 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     ++++l+++++r+
  XP_009130926.1 144 DSRRLFIGWRRR 155
                     9999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3943163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-2944155IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-2648146No hitNo description
SMARTSM010191.3E-2249156IPR003340B3 DNA binding domain
PfamPF023627.0E-3049155IPR003340B3 DNA binding domain
PROSITE profilePS5086313.53549156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK  60
LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK CWRFRYSYWN SSQSYVLTKG  120
WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY  180
SNRPAHSEYS HYGAAVATAT ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA  240
AAAECPRQDS YYDQNMLEID EDERSKDVTR NDQDFRHSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-474615511117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026882e-77CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0067002e-77AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130926.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-122Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A078I8L80.0A0A078I8L8_BRANA; BnaA02g29460D protein
TrEMBLM4CNU80.0M4CNU8_BRARP; Uncharacterized protein
STRINGBra005886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-113B3 family protein