PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130381.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 266aa    MW: 29116.2 Da    PI: 6.9067
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox512.5e-163191257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+++++eq+ +Le+ F++   +p +ee  ++ k l    ++ +++V++WFqNrR + ++
  XP_009130381.1 31 RSRWSPKPEQILILESIFNSgMVNPPKEETVRIRKMLekfgKVGDANVFYWFQNRRSRSRR 91
                    89*****************99*************************************997 PP

2Wus_type_Homeobox108.53.9e-353093265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++Gk++d+NVfyWFQNr++R+r++q
     XP_009130381.1 30 VRSRWSPKPEQILILESIFNSGMVNPPKEETVRIRKMLEKFGKVGDANVFYWFQNRRSRSRRRQ 93
                       589***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-142398IPR009057Homeodomain-like
PROSITE profilePS5007111.5642792IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-92798IPR009057Homeodomain-like
SMARTSM003891.3E-62996IPR001356Homeobox domain
PfamPF000464.5E-143191IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDQGQTPHST TGQSHSPSSS ASGSTSTEPV RSRWSPKPEQ ILILESIFNS GMVNPPKEET  60
VRIRKMLEKF GKVGDANVFY WFQNRRSRSR RRQRQLQAAA AAATTTTNTC DQTMMVSNNL  120
PQHSGSDLGF GGCSTSNYLF ASSSSYGAGC DNHSNNGMEN LLTMSGEMGY HGANQHHYNY  180
HSSNVESILC PSEQSSNYHY QQGSIMVFIN GVPTEVTSGG IDMKVTFGED LVLVNSSGVP  240
LPTDQFGFLM HSLQHGEAYF LVPRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2514020.0AY251402.1 Arabidopsis thaliana WOX11 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130381.10.0PREDICTED: WUSCHEL-related homeobox 11-like
SwissprotQ6X7J31e-149WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A397ZML40.0A0A397ZML4_BRACM; Uncharacterized protein
TrEMBLM4ET500.0M4ET50_BRARP; Uncharacterized protein
STRINGBra031980.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-130WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]