PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129915.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 168aa    MW: 18850.9 Da    PI: 7.0571
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31108166159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K+vk+s++pr+YY+C+   Cpvkk+ver+++dp++v++tYeg+Hnh+
  XP_009129915.1 108 LDDGFKWRKYGKKMVKNSPHPRNYYKCAADACPVKKRVERDKDDPSFVITTYEGSHNHS 166
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3394166IPR003657WRKY domain
SuperFamilySSF1182908.76E-28101166IPR003657WRKY domain
PROSITE profilePS5081129.046103168IPR003657WRKY domain
SMARTSM007745.5E-36108167IPR003657WRKY domain
PfamPF031062.0E-25109165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MNDEETNLAR SFSDDTHSGF GLPDLYLSDE WMDDDLVSAV SGMNHSYGYQ TNVDAVFFSG  60
SSSSFIQPTS PSTKASVAPA SAETQVKKEK KKVKERVAFK TRSDVEVLDD GFKWRKYGKK  120
MVKNSPHPRN YYKCAADACP VKKRVERDKD DPSFVITTYE GSHNHSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2598165774Probable WRKY transcription factor 4
2lex_A1e-2598165774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121700.0FJ012170.1 Brassica napus WRKY50 transcription factor (WRKY50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129915.11e-123PREDICTED: probable WRKY transcription factor 50
SwissprotQ8VWQ56e-88WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A3P6B3K81e-122A0A3P6B3K8_BRACM; Uncharacterized protein
TrEMBLM4DVK21e-122M4DVK2_BRARP; Uncharacterized protein
STRINGBra020546.1-P1e-122(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-83WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]