PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128407.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 248aa    MW: 28059.4 Da    PI: 4.6116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY413.8e-13102151259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++W KYGqK++k s + r        +C+++k+v++ ++ p+v  +tY g+H +e
  XP_009128407.1 102 NDGFSWMKYGQKKIKTSSHQR--------NCNATKRVQQIQDSPSVYRTTYVGKHMCE 151
                     8****************9977........7*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-1496152IPR003657WRKY domain
PROSITE profilePS5081110.67196153IPR003657WRKY domain
SuperFamilySSF1182904.45E-1598152IPR003657WRKY domain
SMARTSM007741.1E-17101152IPR003657WRKY domain
PfamPF031061.5E-12102151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFHGADRAVE ALLRGQESAN LLKTVLEHQR TSSVSIEPLF DTVLDSFSYA LSLFASSNPQ  60
PLCESSQNKP TPVVARKSPK KNSHGEEGLE QYNHDSPTPI CNDGFSWMKY GQKKIKTSSH  120
QRNCNATKRV QQIQDSPSVY RTTYVGKHMC EVNAFLQPNE DIVNGSKMIR FDKTDQGMPE  180
PVMPQLVPVE QEALIIEGTD QIMNLECGSN EFLVDDDQLW EYQFPPCSPG DFMFLDDLSE  240
FDYNPFHV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300721e-167KF430072.1 Brassica rapa WRKY transcription factor 66 (WRKY66) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128407.10.0PREDICTED: probable WRKY transcription factor 67
SwissprotQ93WV76e-74WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLM4CW590.0M4CW59_BRARP; Uncharacterized protein
STRINGBra008456.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.26e-71WRKY DNA-binding protein 67