PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127606.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 297aa    MW: 34284.3 Da    PI: 6.2718
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.8e-31168227159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_009127606.1 168 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 227
                     58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-33153229IPR003657WRKY domain
SuperFamilySSF1182904.71E-28161229IPR003657WRKY domain
PROSITE profilePS5081128.828163229IPR003657WRKY domain
SMARTSM007741.9E-37168228IPR003657WRKY domain
PfamPF031069.6E-28169227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGMDLSLKLE KEKDEERSTH ICERKELEEK EDASEDKDEK MVKEDEIEDS CLSSRTRQEE  60
KEREELLQMQ IEMEHVKEEN TRLRKLVEQT LQDYRQLEMK FPVIDQTNNM KKQKQDENKE  120
LESNNTQRYN SSNKAQGQDM NTQRVIMSSP GNRKTRVSVR ARCDTPTMND GCQWRKYGQK  180
TAKGNPCPRA YYRCTVAPGC PVRKQVQRCL EDMSILITTY EGTHNHPLPV GATAMASTAS  240
ASPFLLLDSS DNLSHPSYLQ QNGSNKQSVR SLINFDDSSF RGGDHVSSSQ NRLNWMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23155231176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127606.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127606.10.0PREDICTED: probable WRKY transcription factor 9 isoform X2
SwissprotQ9C9F01e-131WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A398AA160.0A0A398AA16_BRACM; Uncharacterized protein
STRINGBra033956.1-P1e-175(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-112WRKY DNA-binding protein 9