PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127539.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 338aa    MW: 38511.8 Da    PI: 5.477
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1181.2e-36842172123
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg..... 88 
                     a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ + i el++ +  ++++    ++   ++++++   +     
  XP_009127539.1  84 AVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASETLDWLLKKSRRGINELVQEKKLNNKDGdygNNRGGVEEDEE---Dgdksf 175
                     89**************************************************************5555533322222222222222...133456 PP

             TCP  89 ......kaaksaa.kskksqksaasalnlakesrakararar 123
                           +++++   + kk++ks+ s   l+++ r k+++  r
  XP_009127539.1 176 vygwspDSCEEVVyEVKKTEKSNVSSKGLMDKARGKSKQITR 217
                     677777666666656666666666666666655555554444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.7E-3585192IPR005333Transcription factor, TCP
PROSITE profilePS5136934.03986144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG IIRNPYNHQS TASPGQMVSA VPESLIDYMS  60
FNSNSAVNQK GYEIPEVSRE IKKAVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDM  120
LGFDKASETL DWLLKKSRRG INELVQEKKL NNKDGDYGNN RGGVEEDEED GDKSFVYGWS  180
PDSCEEVVYE VKKTEKSNVS SKGLMDKARG KSKQITREMV YDHPEAVSEI TQTEIMDPFK  240
RSIIFNEGDD MTHSFYKEAI QEFDNQECIL TKTNVNLPTD MDQSYNQHYG TFMLKDKGSS  300
SNYNTILPQN LDYGYDQNPF MDQLFCAVTN RNFPRGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1491144154Putative transcription factor PCF6
5zkt_B5e-1491144154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127539.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-155TCP1_ARATH; Transcription factor TCP1
TrEMBLM4EYW80.0M4EYW8_BRARP; Uncharacterized protein
STRINGBra034010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-148TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]