PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 144aa    MW: 16766.8 Da    PI: 9.8587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-3265123159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fprsYY+Ct +gC+vkk+v+r + d+ vv++tY+g H+h+
  XP_009124053.1  65 LDDGYRWRKYGQKAVKNNPFPRSYYKCTEKGCRVKKQVQRLSGDEGVVVTTYQGVHTHP 123
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-3450123IPR003657WRKY domain
SuperFamilySSF1182903.14E-2957124IPR003657WRKY domain
PROSITE profilePS5081130.87160125IPR003657WRKY domain
SMARTSM007741.4E-3765124IPR003657WRKY domain
PfamPF031062.2E-2666123IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006817Biological Processphosphate ion transport
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEDRSCQVLF PSSSVDHRLS GDQTQINTSS SLQQHNTNKE EKHKSKKKER EARFAFQTRS  60
QVDILDDGYR WRKYGQKAVK NNPFPRSYYK CTEKGCRVKK QVQRLSGDEG VVVTTYQGVH  120
THPVDTPSDN FHHILTQMHI FPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2855128778Probable WRKY transcription factor 4
2lex_A1e-2855128778Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.30967e-57flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00325DAPTransfer from AT3G01970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465800.0KC246580.1 Brassica napus WRKY transcription factor 45.1 (WRKY45.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124053.11e-106PREDICTED: probable WRKY transcription factor 45
RefseqXP_013583917.11e-106PREDICTED: probable WRKY transcription factor 45
RefseqXP_022575702.11e-106probable WRKY transcription factor 45
SwissprotQ9S7632e-68WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBLA0A0D3CNB11e-105A0A0D3CNB1_BRAOL; Uncharacterized protein
TrEMBLA0A397ZGD61e-105A0A397ZGD6_BRACM; Uncharacterized protein
TrEMBLM4FHH91e-105M4FHH9_BRARP; Uncharacterized protein
TrEMBLV9LYL21e-105V9LYL2_BRANA; WRKY transcription factor 45.1
STRINGBra040557.1-P1e-105(Brassica rapa)
STRINGBo5g153870.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01970.11e-69WRKY DNA-binding protein 45
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]