PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123944.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 309aa    MW: 34950.7 Da    PI: 7.9493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.6e-0791113326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  XP_009123944.1  91 YPICS-FAAAGDCPRGSQCPHMHG 113
                     68999.**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.455128IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7426IPR000571Zinc finger, CCCH-type
SMARTSM003560.622850IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0422951IPR000571Zinc finger, CCCH-type
SMARTSM003560.02488114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.21188115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.7E-10138216IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.53E-12145221No hitNo description
CDDcd001620.00266156216No hitNo description
PfamPF000976.9E-8157214IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.386157215IPR001841Zinc finger, RING-type
SMARTSM001848.7E-8157214IPR001841Zinc finger, RING-type
PROSITE patternPS005180181190IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.75244272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.253244273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSDRILCKFF IHGSCLKGEH CEYSHDSNVC TFYQKGICLY GSRCRNEHVR TTSQPQSLSP  60
SNVPPPPQKG DDNNNNNNNN NDVCYIHPRE YPICSFAAAG DCPRGSQCPH MHGDICSTCG  120
KKCLHPFRPE EREEHTKECQ KKQKHIEALK KSQEIECSVC LDRVLSKATP GERKFGLLTE  180
CHHPFCIQCI RNWRSSAPVS GMDVNSTLRA CPICRKLSYF VVPSVVWYST PDEKKEIIDI  240
YKAKLRSINC KHFNFGNGNC PFGGSCFYKH AYSDGHLDEV VVRNLGSQEG ETLIADSIRL  300
SEFLGRVHI
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123944.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123944.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLM4FG230.0M4FG23_BRARP; Uncharacterized protein
STRINGBra040048.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-171C3H family protein