PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122213.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 183aa    MW: 20624.3 Da    PI: 6.1496
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.92.5e-367106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+ dCv++pyf  eq +++f +vhk+FGasnv+k l +lp ++r++a+ ++ yeA  r+ dPvyG+v++i++lqqq+++l++e+
  XP_009122213.1   7 SCGACKFLRRKCNIDCVFSPYFSYEQaSSHFSAVHKVFGASNVSKHLLSLPLHQRSAAAITISYEALSRMCDPVYGCVAHIFALQQQVMTLQEEI 101
                     6***********************9978******************************************************************9 PP

          DUF260  95 allke 99 
                     + l++
  XP_009122213.1 102 EFLGT 106
                     98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6866108IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAAHGSSCGA CKFLRRKCNI DCVFSPYFSY EQASSHFSAV HKVFGASNVS KHLLSLPLHQ  60
RSAAAITISY EALSRMCDPV YGCVAHIFAL QQQVMTLQEE IEFLGTHMAN LSNTTQSRSQ  120
PNDMPEFLNQ MTMDTTTGFI DQTVLNNDVG INCIEGFFTN PEEVLVNHPW FQNMDHYYYA  180
PQH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122213.11e-138PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS81e-102LBD33_ARATH; LOB domain-containing protein 33
TrEMBLM4CY641e-138M4CY64_BRARP; Uncharacterized protein
STRINGBra009161.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-103LOB domain-containing protein 33