PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 305aa    MW: 35006.1 Da    PI: 9.5683
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.8e-1819112197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkvl ++d +++ +  +p +f+++++ k e s++++l+ ++g sW+++l  +k+++   y+ ++GW +F ++ngL + + ++F+++g+++f  +
  XP_009121019.1  19 FFKVLRKEDLSSQTMREIPQDFLKSISAK-EFSFKMVLKLPWGSSWRINL--SKYQSFfyYMEKDGWDQFLSDNGLGADELLTFTHKGNMCF--N 108
                     99*********************999755.799*****************..899888878888****************************..6 PP

                     EEEE CS
              B3  94 vkvf 97 
                     v+++
  XP_009121019.1 109 VSIY 112
                     6665 PP

2B350.73.2e-16219296487
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     + ++s+vl +g   +pk+f e h+ k  e++  ++ d++g +sWev++ ++k ++   +++GW + vk+ gL+ gDf++F+l++ 
  XP_009121019.1 219 TIKKSYVLFLG---VPKRFGEMHMPK--EETVFKIHDRKGkKSWEVTYVVSKIQS--RFSRGWPRLVKDFGLEIGDFCTFELIKP 296
                     55667777665...9*****999855..44589999*99989******5555555..599*********************9874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1912115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2014120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-1817112No hitNo description
PfamPF023623.4E-1519111IPR003340B3 DNA binding domain
SMARTSM010191.3E-2019115IPR003340B3 DNA binding domain
PROSITE profilePS5086312.98519115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-18213303IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323213305IPR003340B3 DNA binding domain
CDDcd100171.15E-16214297No hitNo description
SuperFamilySSF1019363.34E-19214303IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-15216304IPR003340B3 DNA binding domain
PfamPF023622.2E-13219298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MATNSCIGML MDESDNPGFF KVLRKEDLSS QTMREIPQDF LKSISAKEFS FKMVLKLPWG  60
SSWRINLSKY QSFFYYMEKD GWDQFLSDNG LGADELLTFT HKGNMCFNVS IYQINCLEML  120
RPNRSATIAS SSSRNKREEV SNGKEEERES LSASNYPVSE TAESTVGGRL KQKRQLINLG  180
KKQVKKAEKA NKCKKRKMDT ESDDSEDGTS SLAPEFTLTI KKSYVLFLGV PKRFGEMHMP  240
KEETVFKIHD RKGKKSWEVT YVVSKIQSRF SRGWPRLVKD FGLEIGDFCT FELIKPTEMI  300
LTVSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121019.10.0PREDICTED: B3 domain-containing protein At5g18090
SwissprotQ9FK611e-116Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLA0A078HJ490.0A0A078HJ49_BRANA; BnaA10g16730D protein
STRINGBra002132.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-112B3 family protein