PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120195.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 387aa    MW: 43429.4 Da    PI: 9.3581
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19224257134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_009120195.1 224 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 257
                     *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.3E-21218270IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.47E-13219259No hitNo description
PROSITE profilePS5011412.466222254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15222258IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.39E-13223253No hitNo description
PROSITE patternPS003440224249IPR000679Zinc finger, GATA-type
PfamPF003204.9E-17224257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGSNFHYSID LNEDQDHHEE PFFYPLGSSS SLLHNYQVPS NSSSSSSSIS SLSSYLPFLI  60
NSQDDQHVAC NNTYQYEHFH LSQPLKANMF NGGSSSSSYD RMVPKKETRL KLTIRKKDHH  120
DDQTDFLHHP TKPNSDSDKW MMSPKMRLIK KTITNNKQPT DQANNNNNRN HKEDHYPFNQ  180
KTSFEKDHDE DLKKVTTTAV TTENRYNTIK DNGYGNNNGV IRVCSDCNTT KTPLWRSGPR  240
GPKSLCNACG IRQRKARKAA MAAAVAAGDQ EVVAAQLQQI PAKKKLQSKK KRSNGGDKFN  300
LSPPVMSKTK KCKIKEQEQE DTTTVAGDSE ISKSTTSSDS SISSNKLCFN DLTIMLRKSS  360
AYQQVFPQDE KEAAILLMAL SHGMVHG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.75450.0bud| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120195.10.0PREDICTED: GATA transcription factor 21-like
SwissprotQ5HZ361e-169GAT21_ARATH; GATA transcription factor 21
TrEMBLA0A078H2A80.0A0A078H2A8_BRANA; BnaA10g10940D protein
TrEMBLM4CF060.0M4CF06_BRARP; Uncharacterized protein
STRINGBra002788.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-148GATA family protein