PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 182aa    MW: 20386.9 Da    PI: 9.3705
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.32.2e-15771641299
           NF-YC  12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      ++d k  ++P+ ri++i+++d+   +i  +a  l+ ka elfi  ++  ++  + + k++ ++   ++++v++++ ++fl d vp++
  XP_009118400.1  77 GVEDAKMIRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSGEAYESSVQDKKKFIHYKHLSSVVSNSERYEFLADCVPEK 164
                     56789999*****************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-1884163IPR009072Histone-fold
PfamPF008088.3E-2285148IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.8E-2486163IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVSSKKPNQE KKPKSDGVNK AGGGNTRSSG SKPKKKNTNV QAIVKKEPEV HEISESSSSD  60
SVEETRRDEP MKSNGGGVED AKMIRFPMNR IRRIMRSDNS APQIMQDAVF LVNKATELFI  120
ERFSGEAYES SVQDKKKFIH YKHLSSVVSN SERYEFLADC VPEKVKAEVA LEEWEKSMTD  180
AG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971460.0KC797146.1 Brassica napus transcription factor subunit NF-YC10A (NF-YC10A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118400.11e-132PREDICTED: chromatin accessibility complex protein 1-like
TrEMBLA0A0A7ANT41e-132A0A0A7ANT4_BRANA; Transcription factor subunit NF-YC10A
TrEMBLM4ES281e-132M4ES28_BRARP; Uncharacterized protein
STRINGBra031606.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-70nuclear factor Y, subunit C10