PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 297aa    MW: 33502.8 Da    PI: 10.0472
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind347.33.5e-10612971301
       GAGA_bind   1 mdddgsrernkgyye............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                     mdd g+r+   g+++            + ++ ++   +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+a
  XP_009116702.1   1 MDDGGHRD--NGWHKashgkqwmmqqhQ-PQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALAA 92 
                     77777744..444444455666665431.344444556********************************************************* PP

       GAGA_bind  84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
                     l++++ s++            t+  ++ + ++  q++++++e+re+e++  +p++  ++  +++k++k+   a+k   k+++k+kk++e++  k 
  XP_009116702.1  93 LQYRDSSMS------------TSRQHQPHIHHMLQVTENTYETRETETSPPPPTK--PKRGRKAKEPKAA-PANKRGPKTQRKVKKENEDDLTKL 172
                     ***888733............333333333344789*********9988777754..4555555555532.333333344556667677777777 PP

       GAGA_bind 179 kkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                       +++ + sk++++ ++  +ln v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++L
  XP_009116702.1 173 MFDEEATGSKSDWRGQETvGLNRVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFSKLLSRL 267
                     77776789******998649*************************************************************************** PP

       GAGA_bind 273 aaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                     aaeG +dlsnpvDLkdhWAkHGtn+++ti+
  XP_009116702.1 268 AAEGhHDLSNPVDLKDHWAKHGTNRYITIK 297
                     ****88***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.2E-1341297IPR010409GAGA-binding transcriptional activator
PfamPF062172.8E-1011297IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDDGGHRDNG WHKASHGKQW MMQQHQPQQH QPSMKQVMSI IAERDAAIQE RNLAISEKKA  60
AVAERDMAFL QRDTAIAERN NAIMERDSAL AALQYRDSSM STSRQHQPHI HHMLQVTENT  120
YETRETETSP PPPTKPKRGR KAKEPKAAPA NKRGPKTQRK VKKENEDDLT KLMFDEEATG  180
SKSDWRGQET VGLNRVVYDE TTMPPPVCSC TGVLRQCYKW GNGGWQSSCC TTTLSMHPLP  240
ALPNKKHARV GGRKMSGSAF SKLLSRLAAE GHHDLSNPVD LKDHWAKHGT NRYITIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.148010.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116701.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_009116702.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_009116703.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_009116704.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
SwissprotQ8L9991e-161BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A3P5YQL10.0A0A3P5YQL1_BRACM; Uncharacterized protein
STRINGBra007518.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.35e-95basic pentacysteine 6