PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 245aa    MW: 26699.3 Da    PI: 7.1979
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.43e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg+++++++ ++q+
  XP_009115680.1   2 SCNGCRVLRKGCSESCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQSPALFQSLLYEACGRTVNPVNGAVGLLWTGNWSICQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_009115680.1  97 AVETVLR 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4951107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQS  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSICQAAVET VLRGGSLRPM PELLTRDGGF  120
GGFPSTTSDE ASEICTEMLN DCGDRSAYHH CRFSSSRTSR PTASPPNRKR LASEQQQRQS  180
SELDLSLLPT FPIKTTPLKE ETVRPETPSM YSGESVTTTP FMDNIAGERF VRVGGETTKL  240
LNLFA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.218610.0bud| silique
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115680.10.0PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN231e-131LBD38_ARATH; LOB domain-containing protein 38
TrEMBLM4F4P00.0M4F4P0_BRARP; Uncharacterized protein
STRINGBra036040.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-128LOB domain-containing protein 38