PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114215.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 171aa    MW: 18452 Da    PI: 9.1672
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.9e-174074135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt kTplWR g  g+k+LCnaCG++ rkk++
  XP_009114215.1 40 CVDCGTFKTPLWRGGLAGPKSLCNACGIKSRKKRQ 74
                    *********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.3853470IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-113485IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-113577No hitNo description
Gene3DG3DSA:3.30.50.102.1E-133874IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-103987No hitNo description
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
PfamPF003201.4E-144074IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSEGSEETKT KIDSAGELSD VDNENCSSSG SGGGETKKTC VDCGTFKTPL WRGGLAGPKS  60
LCNACGIKSR KKRQAALGIK PEKKIRKSNS CESDLSLEDD RNVNNKIKKA DDHTSTSSSC  120
SKRVSKFLDL GLEVPVMKRS SVEKKRLWKK LGEEERAAVL LMALSCGSVY A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893177e-89AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114215.11e-120PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB59e-72GAT17_ARATH; GATA transcription factor 17
TrEMBLM4DXG31e-120M4DXG3_BRARP; Uncharacterized protein
STRINGBra021209.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.16e-72GATA transcription factor 17