PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113932.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 377aa    MW: 41596.4 Da    PI: 8.1881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.6e-07100123326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      e C+ f+ +G C++Gd C FaHg
  XP_009113932.1 100 GEVCPEFRNGGDCSRGDMCGFAHG 123
                     589********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-596127IPR000571Zinc finger, CCCH-type
SMARTSM003560.001997124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.04298125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-699125IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4101123IPR000571Zinc finger, CCCH-type
SMARTSM003563133156IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDVEHHNSGH IGRPTVDIPP RKLLSSAVSP SSPCPEDKAQ KDCCYDSDSD DPYAGDHFRM  60
YEFKIRRCTR SRSHDWTDCP FAHPGEKARR RDPRRYHYTG EVCPEFRNGG DCSRGDMCGF  120
AHGIFECWLH PSRYRTEACK DGKHCKRKIC FFAHSPRQLR VLPPSENFVS GGGGSAASSP  180
ASVLSYKNNR CCVFCSHSPT STLLDLSRSP TSSPPLSPAN KSAVFSRMSR RHSALAHKQV  240
LHELINSLDS FSFKEALAAA SSSSPVTMPV TTGETMLASS NRSNNHRLPP WIDVGDRDLQ  300
LQQSSFKYAF SPSSTPSYLN GQLPPPSFFS DEFTPRGGRL SDFTVAATAA AEARGKNSFE  360
VGHSGDLDLG WVNDLLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113932.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113932.10.0PREDICTED: zinc finger CCCH domain-containing protein 61
SwissprotQ9FKW21e-177C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A397XUR90.0A0A397XUR9_BRACM; Uncharacterized protein
TrEMBLM4EFH50.0M4EFH5_BRARP; Uncharacterized protein
STRINGBra027537.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-159C3H family protein