PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111506.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 222aa    MW: 24234.3 Da    PI: 6.621
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36.2e-39111111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ae+ +++fa+vhk+FGasn +kll  +p ++r++a+++l yeA ar+rdPvyG+vg+i++lq+q+++l++el
  XP_009111506.1  11 PCGACKFLRRKCVAECIFAPYFDAEEgTAHFAAVHKVFGASNTSKLLLMIPANRRPEAVATLSYEALARLRDPVYGCVGHIFALQHQVMSLQEEL 105
                     7*********************999879******************************************************************* PP

          DUF260  95 allkee 100
                     a++k++
  XP_009111506.1 106 AVVKTH 111
                     *99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.84810112IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSGSTPSGGS PCGACKFLRR KCVAECIFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI  60
PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQVMS LQEELAVVKT HLTTLERLPP  120
QPKQQNNSQT EAASSTKAPL IATADHKKNN VSSSLLHIYG MSQEQQQQQP QEGTEVPNES  180
VDFSTLLGLE DPLDRDGDLN TLAREFVSKY LTDGKYRSSS PI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111506.11e-166PREDICTED: LOB domain-containing protein 31
RefseqXP_013731248.11e-166PREDICTED: LOB domain-containing protein 31
SwissprotO813221e-110LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A078JPX11e-166A0A078JPX1_BRANA; BnaUnng02520D protein
TrEMBLM4F8B01e-166M4F8B0_BRARP; Uncharacterized protein
STRINGBra037322.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-101LOB domain-containing protein 31