PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 207aa    MW: 22843.8 Da    PI: 8.9141
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110210.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.6e-18163199135
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+  nC++++Tp+WR+gp g+k+LCnaCG+++rk+++
  XP_009110210.1 163 CTnmNCKAINTPMWRKGPLGPKSLCNACGIKFRKEKE 199
                     55559*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-6159206IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-10160201No hitNo description
PfamPF003207.1E-16163199IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-12166201IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.068167201IPR000679Zinc finger, GATA-type
CDDcd002023.45E-10167201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MENEFDLTLR LGLPSPTVET HLSLNTLTTD QGNNVDGNRR DNNDNGDIRG RRHILNNNES  60
TNGHEGGKKN VDVNTRFYNL IVNHFAGVGK ALNFEPLPMQ PSPAPVPETP MGIDYVLIDV  120
PAKGAQRNSL AFKNAVDAHE TLGRRWGCSG ACTAGRINEM RKCTNMNCKA INTPMWRKGP  180
LGPKSLCNAC GIKFRKEKEK RCNGTDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110210.11e-154PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT455e-42GAT29_ARATH; GATA transcription factor 29
TrEMBLM4E5751e-135M4E575_BRARP; Uncharacterized protein
STRINGBra023929.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-38GATA transcription factor 29