PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109609.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 308aa    MW: 34410.5 Da    PI: 7.1472
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.82e-30431441123
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 
                     a+g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+  +++ ++                        
  XP_009109609.1  43 ATGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSISDLNPIDTNFEQTL---------------------- 115
                     5899************************************************************944444222...................... PP

             TCP  96 kskksqksaasalnlak.esrakararar 123
                     + +ks++s++s l+l++ esr kar+r  
  XP_009109609.1 116 SLSKSSTSESSLLSLSRtESRGKARERTA 144
                     22333333333333333333333333311 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2945147IPR005333Transcription factor, TCP
PROSITE profilePS5136931.03546104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEDDDDIETQ QQTSRKLQRL SSDKTEMRDW SNPSSRIIRV SRATGGKDRH SKVLTSKGLR  60
DRRIRLSVAT AIQFYDLQDR LGFDQPSKAV EWLINAASDS ISDLNPIDTN FEQTLSLSKS  120
STSESSLLSL SRTESRGKAR ERTAKDKDLQ SSFTQLLTRG FDESNRSWTG GGSSDCFNPV  180
QLIPSSLNHR QEPSLNHSNS QNQYSFLPNY NVGISSSDSP GEAGCYSSRG TLQSNSLPLF  240
LNNNINQRSI SSSSSSSSPM DSQSISFFMS PPLHNHSHDQ LPEAFDGRLY LYYGEGNRSS  300
DDKGKERR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1951104154Putative transcription factor PCF6
5zkt_B4e-1951104154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531561e-54AK353156.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-I20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109610.10.0PREDICTED: transcription factor TCP24-like
RefseqXP_018508964.10.0PREDICTED: transcription factor TCP24-like
SwissprotQ9C7581e-122TCP24_ARATH; Transcription factor TCP24
TrEMBLA0A397YD150.0A0A397YD15_BRACM; Uncharacterized protein
TrEMBLM4D2T60.0M4D2T6_BRARP; Uncharacterized protein
STRINGBra010789.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-114TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]