PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108686.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 607aa    MW: 66702.8 Da    PI: 7.4536
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.6e-16328366240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  XP_009108686.1 328 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 366
                     689**********************************96 PP

2TCR52.31.1e-16413451139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN 
  XP_009108686.1 413 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 451
                     589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-19327368IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.543328453IPR005172CRC domain
PfamPF036385.7E-12330365IPR005172CRC domain
SMARTSM011144.2E-17413454IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.6E-12415451IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MDTPQKTVTQ IETPVSKLKV ENSPVFNYIN SLSPITTVKS ISNAQTFSSL SFTSPPPVFT  60
TPHVASHKGS RFRSHSNSSD PSNKVVEEAL PEKEPPQILN NDCLTTTTPR VTNDGACEDG  120
ETDLQKMCDD NVKRKSDTPD WETLISDSSD MLIYGSPNDS EAFRCFLQRS SDSKTRLCSG  180
SKPALAPVSQ SNEPESSDAL SVLHRGVRRR CLDFEMPRNN NQTPRCVVPS IGLHLNAIAM  240
SSKDNNNVSK EYSFTGNVKV GLQSSTTTPV LPSDDIVREN ETREEAAGEE GLEEAPVSLA  300
LVEVSQSSPK KKRMCRRKSE QAGEGESSCK RCNCKKSKCL KLYCECFAAG VYCIEPCSCI  360
DCFNKPIHED TVLATRKQIE SRNPLAFAPK VIRNSDSTIE VGEDASKTPA SARHKRGCNC  420
KKSNCLKKYC ECYQSGVGCS INCRCEGCKN AFGRKDGSSF AGMDTEQDQE NETSGKSGTT  480
IPLPPSTPMP LRQPLAQLPI SSNNMLPSQQ SQQHLHGASL YNSQSFRKQD MGLMSQSRIE  540
TIAEERAEDI ENFIHSPVTN INALSPNSKR VSLPHMDSTE TTPWRRNGGR KLLLSSIPTF  600
PSLTPHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1733245014120Protein lin-54 homolog
5fd3_B3e-1733245014120Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00044PBMTransfer from AT3G22760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108686.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2051421e-141AF205142.1 Arabidopsis thaliana CXC domain containing TSO1-like protein 1 (SOL1) mRNA, complete cds.
GenBankAY0996531e-141AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.
GenBankAY1288371e-141AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108686.10.0PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X1
SwissprotQ8L5480.0TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBLA0A398AT550.0A0A398AT55_BRACM; Uncharacterized protein
STRINGBra023810.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]