PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LSD
Protein Properties Length: 133aa    MW: 14308.5 Da    PI: 9.0313
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD150.53.3e-161438125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr++L YPrGA++VRCalC+tV
  XP_009108471.1 14 CHGCRNTLLYPRGATNVRCALCNTV 38
                    ************************9 PP

2zf-LSD1504.8e-164670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg+Crt+L+YP+GA+sV+Ca+C++V
  XP_009108471.1 46 CGNCRTTLMYPYGASSVKCAVCQFV 70
                    ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.9E-161139IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-131438IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-144373IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-144670IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MFSNRAEMQD QLVCHGCRNT LLYPRGATNV RCALCNTVNQ FAHINCGNCR TTLMYPYGAS  60
SVKCAVCQFV TNVNMGNRRV PNMPNGAASP GTMSTQSTPP SKTQTVVVEN PMSVNESGKL  120
VSNVVVGVTT CKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.51095e-76flower| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4533224e-74AF453322.1 Brassica oleracea zinc finger protein LSD1 (LSD1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108471.11e-93PREDICTED: protein LSD1-like isoform X2
SwissprotP940771e-47LSD1_ARATH; Protein LSD1
TrEMBLM4DWN07e-88M4DWN0_BRARP; Uncharacterized protein
STRINGBra020924.1-P2e-87(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-47LSD family protein