PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106858.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 247aa    MW: 27809.4 Da    PI: 9.4815
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72e-27110168159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+W+ YGqK ++g+++ r YY+Ct++gC vkk+ver a++ k ++itY g+H+h+
  XP_009106858.1 110 LDDGYSWKNYGQKLIRGNPNVRRYYKCTFSGCDVKKHVERRADNAKSLVITYYGNHEHD 168
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-2897170IPR003657WRKY domain
SuperFamilySSF1182908.63E-24104170IPR003657WRKY domain
PROSITE profilePS5081128.988105170IPR003657WRKY domain
SMARTSM007741.3E-27110169IPR003657WRKY domain
PfamPF031062.3E-21111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEMTSFSASQ LIFTIAPPSP DAIIGPPEMV ESSGGDHATM MISNNGLPHQ RMDVDQAPED  60
HNIIDVLNVE PSSPKRRGNE VSLSNMIIAS RTGRYDERVI IQMKSEENNL DDGYSWKNYG  120
QKLIRGNPNV RRYYKCTFSG CDVKKHVERR ADNAKSLVIT YYGNHEHDAP VQRRKSYSLK  180
KRSGSPMFQD ASNRTPRLGR PPFSSSAFQV FPPSLEPHLG MTQINMNGLS KLPSLPANQM  240
VHRYTWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22101170877Probable WRKY transcription factor 4
2lex_A1e-22101170877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106858.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931430.0KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106856.10.0PREDICTED: probable WRKY transcription factor 10 isoform X1
RefseqXP_009106858.10.0PREDICTED: probable WRKY transcription factor 10 isoform X3
TrEMBLA0A3P6BM981e-153A0A3P6BM98_BRACM; Uncharacterized protein
STRINGBo3g185390.11e-146(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.13e-34WRKY DNA-binding protein 10