PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105865.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 356aa    MW: 37206.3 Da    PI: 7.4347
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1241.7e-3838118483
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                      k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  ++
  XP_009105865.1  38 VKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRGGGG 118
                     5899***************************************************************88843333322222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.4894296IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-3442127IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
METRTAEEAS LQLNSTENPS PGGGSVPSTA LAVVKSAVKK PSKDRHTKVD GRGRRIRMPA  60
VCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIATTGTG TIPANFSTLN ASLRGGGGGG  120
STVFAQSSKS SSLPMSFQGS GMSLYDDSNG ANGSSSSVVV DHSRKLLNGG VFGFHHPPIM  180
SAERNPYRED YFKESEVPSG SSQKPGQFQD QELGPGPGMG RGTPTASVVP QPMWAVAPGS  240
TNGGSAFWML PMSGSGGREQ MQQQQPGHQM WAFNPGSYPV GTGRVVTAAP MGSMMLGGQQ  300
LGLGVAEGNM AAALRGGRGG DGLGMTLEQH QHQHHQQHQE PNNQGEASEN GGDDKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.146560.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105865.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G41e-160TCP22_ARATH; Transcription factor TCP22
TrEMBLM4DHW30.0M4DHW3_BRARP; Uncharacterized protein
STRINGBra016090.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-94TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]