PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105263.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 341aa    MW: 38786.3 Da    PI: 6.5294
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.42.9e-39842242127
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssg.. 88 
                     a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++ ++ ++++        ++++++ ++    +  
  XP_009105263.1  84 AVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEKNLNNTDEdfgnigGEVEEEEDGD----Ksf 174
                     89**************************************************************554442222233333333333333....134 PP

             TCP  89 ..........kaaksaakskksqksaasalnlak.esrakarararertr 127
                               ++ + + k+ ++++++ + +n++  esrakar +a+e t 
  XP_009105263.1 175 lygsspdsweEEVACEVKKAQKRNKKIELSNISSkESRAKARGKAKEMTY 224
                     45667777754444444666666666666777667**********99764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3985225IPR005333Transcription factor, TCP
PROSITE profilePS5136933.90886144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSSSNNDYIN GNNGVYPLSL YLSPLAGHQD IIRNPYNHQP TPSPGQMVSA VPESLMNYMS  60
FSSNRAVNQQ GFKIPEVSRE IKKAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM  120
LGFDKASKTL DWLLKKSRRA IKELVQEKNL NNTDEDFGNI GGEVEEEEDG DKSFLYGSSP  180
DSWEEEVACE VKKAQKRNKK IELSNISSKE SRAKARGKAK EMTYDHPETI SEITQTETMD  240
PLKRSIISNE GEHMTHSLYK EATQEFDSQE CILSKTKVNL PTNMDQIYNQ NYGTSMLKDQ  300
GSSSNYNNIL PQNLDFYYDQ NSFVDQPFCA VTKTSFPRGF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1391144154Putative transcription factor PCF6
5zkt_B4e-1391144154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196VKKAQKR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105263.10.0PREDICTED: transcription factor TCP1
RefseqXP_009105264.10.0PREDICTED: transcription factor TCP1
SwissprotQ9FYG71e-158TCP1_ARATH; Transcription factor TCP1
TrEMBLM4CJ280.0M4CJ28_BRARP; Uncharacterized protein
STRINGBra004212.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-155TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]