PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105232.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 311aa    MW: 34961.2 Da    PI: 7.7626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.7e-15238262226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tG C+yGd+C+FaHg
  XP_009105232.1 238 KTELCNKWQQTGACPYGDNCQFAHG 262
                     9***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.2E-19231269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-11234268IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-9236263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765236264IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-12238262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-9270304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-12270303IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178274302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEKVASAVTD LACVTALNSP PPPLSPQSDK SVTKQHQEDF AASFASLYNS IFSPESQFPD  60
SLSLSPSPPY SSSSPPFRVD IATEHRLRQA SLILEYDELN ENYEVCLSRL QSLMTELDSL  120
RRENDALRQE NVDLLKLIHI STSSSSSSVS PPHVRNRQQI SDFRSQARRR SDPERNSLPK  180
SISVRSPGYL KMMSHGYGGA SRQTSQLGSD SVTQKVCVPT KGERDALELE VYRQGMTKTE  240
LCNKWQQTGA CPYGDNCQFA HGIDELRPVI RHPRYKTEVC RMIVTGSTCP YGHRCHFRHS  300
LTDQERMLLT H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21238300567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105232.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_018508597.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N31e-133C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLM4CJ050.0M4CJ05_BRARP; Uncharacterized protein
STRINGBra004189.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-132C3H family protein