PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 347aa    MW: 39380 Da    PI: 6.1198
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.78.5e-38852232123
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg..... 88 
                     a+kkdrhskihT++g+RdRRvRls+e+ ++fFdLqd+LGfdk+s+t++WLl+++ + i el++ +  +++     +++ +++ ++ ++ g     
  XP_009105130.1  85 AVKKDRHSKIHTAQGLRDRRVRLSIEISRQFFDLQDMLGFDKASETLDWLLKKSRRGINELVQEKKLNNNVEdfgNDGGNVVHEE-DNVGdnsfv 178
                     89**************************************************************444442223332222222222.222234556 PP

             TCP  89 .........kaaksaakskksqksaasalnlak.esrakararar 123
                              ++   + k+ +++k++++++n++   sraka+ +a+
  XP_009105130.1 179 ygsspysfeEEVLCEVKKAEKRKKKTEMSNISSkGSRAKAKGKAK 223
                     777888886445555577778888888888887799999998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3686225IPR005333Transcription factor, TCP
PROSITE profilePS5136933.58387145IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSSNNGYNN GSNNGVYPLS LYLPSLSGQQ DIIRNPYNHQ LTASPGQMLS AVPESLMDYM  60
AFNSNNVMNQ QGFEIPEVSR EIKKAVKKDR HSKIHTAQGL RDRRVRLSIE ISRQFFDLQD  120
MLGFDKASET LDWLLKKSRR GINELVQEKK LNNNVEDFGN DGGNVVHEED NVGDNSFVYG  180
SSPYSFEEEV LCEVKKAEKR KKKTEMSNIS SKGSRAKAKG KAKGITIDMT NDHPETASEI  240
IQTEIMDPFK RSIIFNEGEE MTHSFYKESI QESDNHECIT KKKVNLPMNM DQGYNQHYGA  300
LMLKDQGSSS NYNAILPQNF DCDYNPNPFI DQLFCGVTNT NFFRGFP
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105131.10.0PREDICTED: transcription factor TCP1-like
RefseqXP_018508584.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-152TCP1_ARATH; Transcription factor TCP1
TrEMBLM4CIR30.0M4CIR3_BRARP; Uncharacterized protein
STRINGBra004097.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-139TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]