PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104251.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 341aa    MW: 38028.1 Da    PI: 9.6386
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind387.42.2e-11813411301
       GAGA_bind   1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd g+r+  r+k+ + +   ++ +s+     +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l al+++e
  XP_009104251.1   1 MDDGGHRDngRHKApQGQwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDSALSALQYRE 90 
                     999999888888873211222222444.....5************************************************************** PP

       GAGA_bind  89 nsla.........salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkk.rqrakkpkekkakkkkk 169
                     ns+a          a+p+g+q+ +g+k+i++ q++++     ql+d+a++  e+++++ lp++  + +a +++k+k+ ++r k+pk+++++ ++k
  XP_009104251.1  91 NSMAtpsavsnmaAACPPGCQMPRGVKHIHHPQMHQHqhhmLQLSDHAYD--ESREMDGLPTSPPPGTALDSAKPKRgGKRVKDPKATTKTTANK 183
                     **999*****99999*****************996665778899999999..55556678888888888777776652699************** PP

       GAGA_bind 170 ksekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
                     +++k+ +kvkke++d+                         sk+++ks+++ +ln+v +De+t+P+PvCsCtG lrqCYkWGnGGWqS+CCttti
  XP_009104251.1 184 RGPKNPRKVKKENEDDLtkimfvkttldygeeetsklvltgSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGDLRQCYKWGNGGWQSSCCTTTI 278
                     ***********99883358********************************88****************************************** PP

       GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                     S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  XP_009104251.1 279 SMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 341
                     *************************************88***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.7E-1641341IPR010409GAGA-binding transcriptional activator
PfamPF062173.0E-1001341IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDDGGHRDNG RHKAPQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE RKSAVAERDM  60
AFLQRDTAIA ERNNAIMERD SALSALQYRE NSMATPSAVS NMAAACPPGC QMPRGVKHIH  120
HPQMHQHQHH MLQLSDHAYD ESREMDGLPT SPPPGTALDS AKPKRGGKRV KDPKATTKTT  180
ANKRGPKNPR KVKKENEDDL TKIMFVKTTL DYGEEETSKL VLTGSKSDWK SQEMVGLNQV  240
VYDETTMPPP VCSCTGDLRQ CYKWGNGGWQ SSCCTTTISM YPLPALPNKR HARVGGRKMS  300
GSAFNKLLSR LAAEGHHDLS NPVDLKDHWA KHGTNRYITI K
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5295140.0EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104251.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_013648260.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_018508631.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA5A5100.0A5A510_BRARP; GAGA-binding transcriptional activator
STRINGBo6g076850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6