PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103698.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 439aa    MW: 47856.3 Da    PI: 7.5587
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-17140189155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009103698.1 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189
                     78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-9140189IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-15140197IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-17141197IPR001471AP2/ERF domain
CDDcd000189.82E-11141196No hitNo description
SMARTSM003801.2E-32141203IPR001471AP2/ERF domain
PROSITE profilePS5103217.82141197IPR001471AP2/ERF domain
CDDcd000181.26E-10232277No hitNo description
SuperFamilySSF541711.11E-5232276IPR016177DNA-binding domain
SMARTSM003806.7E-10233281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MLDLNLDADS PESTQYGDSY ADRKTSDGSG NRSETSTSSV INAEADDDSC STRAFTLNFD  60
ILKVGSSGDG CGGGGDESTA VTKEFFPVAG DCGHLRGSSS RSWIDLSFDG SRQGETNLVA  120
PAPAPAPVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGV DADINFTLGD YEEDMKQVQN LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKAYDK AAISSNGREA VTNFELSSYQ NETNSETNNQ GAHDKLDLSL  300
GMSLSPGNAS KQNGRLFHYP SNTYETQRGV SLTIGNEFMG KPVNAPLPYG SSDHRAYWNG  360
YNNPVEGRAT EKRSEAEGGG MMSNWGWQGP GQTSAMRPQP PGPQPQLFSV AAASSGFSNF  420
RQQPPNDNAS SLGYFYPQP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.162610.0bud| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103698.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103698.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
RefseqXP_013653877.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_013653880.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3P6C1H10.0A0A3P6C1H1_BRAOL; Uncharacterized protein
STRINGBo4g070350.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.10.0related to AP2.7