PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639809.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 283aa    MW: 32596.9 Da    PI: 8.2282
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85.3e-221762449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +n+ n qvtfskRr+g++KKA+EL++LC+ae+ vi+fs+  k++ +
  XP_013639809.1 17 KNENNLQVTFSKRRTGLFKKASELCTLCGAEIVVIVFSPGKKVFSF 62
                    8999***********************************9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-32665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.829666IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-27786IPR002100Transcription factor, MADS-box
CDDcd002654.40E-33778No hitNo description
PRINTSPR004041.0E-17828IPR002100Transcription factor, MADS-box
PfamPF003198.4E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVRKSKGRQK IEMVKMKNEN NLQVTFSKRR TGLFKKASEL CTLCGAEIVV IVFSPGKKVF  60
SFGHPNVDCV IDRFANINPP NPRQHTDMQL SEARRNAIVR DLNNHLTQVT EEFEIEKKRT  120
EDLKQKRKNS NMPENWWEEP IEELNLSQLT EFKCGLEKLR KTVTTEASKN FQAIVPRHNF  180
YGGSSNNSTF GICDDHAGNI DTDLDLYNHQ RMVATNTFAC NLNNMMVPYH ITTPFGNIGN  240
SNIIEGFTPE YNQNPNKLCF KQEHMSECDH HSAHPLRFGH GYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-15788183Myocyte-specific enhancer factor 2A
3kov_B1e-15788183Myocyte-specific enhancer factor 2A
3kov_I1e-15788183Myocyte-specific enhancer factor 2A
3kov_J1e-15788183Myocyte-specific enhancer factor 2A
3p57_A1e-15788183Myocyte-specific enhancer factor 2A
3p57_B1e-15788183Myocyte-specific enhancer factor 2A
3p57_C1e-15788183Myocyte-specific enhancer factor 2A
3p57_D1e-15788183Myocyte-specific enhancer factor 2A
3p57_I1e-15788183Myocyte-specific enhancer factor 2A
3p57_J1e-15788183Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639809.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-109AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A0D3CIC60.0A0A0D3CIC6_BRAOL; Uncharacterized protein
STRINGBra022434.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-110AGAMOUS-like 62