PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639632.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 341aa    MW: 38799.8 Da    PI: 6.614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05173192120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_013639632.1 173 FSCPLCFKTFNRYNNMQMHM 192
                     89*****************9 PP

2zf-C2H213.10.00029257279123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  XP_013639632.1 257 FACRRCGKAFAVKGDWRTHEKNC 279
                     78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66173200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-6239277No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5243277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSNPACSNLF NNGFDNTNFN YSTPLSYIYN SQNSFYHPDT TNPNYMSPTT TTSIFPNYSP  60
PLREALPLLS LSPIRHQEQQ DQTCFLNTDH TTSSNFHDVT VDLHLGLPNY GAGGSYIAPE  120
ATTEEQDQDH DQEVEVTVES HLHDDDDHHG DLYRGHNYWI PTPAQILIGP TQFSCPLCFK  180
TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCF CCAPGCKNNI DHPRAKPLKD  240
FRTLQTHYKR KHGSRPFACR RCGKAFAVKG DWRTHEKNCG KLWYCSCGSD FKHKRSLKDH  300
VKAFGNGHVP CGIDSFGGDH EDYYEAASEI EQQDDCNNNE C
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639632.10.0PREDICTED: zinc finger protein WIP5-like
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A078HAZ50.0A0A078HAZ5_BRANA; BnaC05g27160D protein
TrEMBLA0A3P6EIT80.0A0A3P6EIT8_BRAOL; Uncharacterized protein (Fragment)
TrEMBLM4ENT00.0M4ENT0_BRARP; Uncharacterized protein
STRINGBra030450.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]