PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638984.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 257aa    MW: 28894.8 Da    PI: 7.8013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.55.6e-3324134199
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k ltpsdv+k++rlv+pk++ae++             +++e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F+
  XP_013638984.1  24 FEKSLTPSDVGKLNRLVIPKQHAERYlplnncgggddvTESTEKGVLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSRYVKDKHLNAGDVVLFQ 118
                     99********************************99996677899************************************************** PP

                     E-SS.SEE..EEEEE-S CS
              B3  84 ldgr.sefelvvkvfrk 99 
                     ++ r +  +l+++++r+
  XP_013638984.1 119 RH-RfDIHRLFIGWRRR 134
                     65.44888899999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4016143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-3119136IPR015300DNA-binding pseudobarrel domain
CDDcd100175.63E-2923123No hitNo description
SMARTSM010195.2E-2524135IPR003340B3 DNA binding domain
PROSITE profilePS5086313.76124135IPR003340B3 DNA binding domain
PfamPF023626.2E-3024134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSVNHYSNTL SSHNHHNDHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGDD  60
VTESTEKGVL LSFEDESGKS WKFRYSYWNS SQSYVLTKGW SRYVKDKHLN AGDVVLFQRH  120
RFDIHRLFIG WRRRGETSSS SAVSAVSQDP RANTTAFWNG LTTPYRQVHA STSSYPNNIH  180
QGYSHYGPVA ETPTVVAGSS RTVRLFGVNL ECHSDVVEPP PCPDAYNGQH IYYYSTPHPM  240
NISFAGEAME QVGDGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-442113411117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895470.0AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638984.10.0PREDICTED: B3 domain-containing protein At3g11580-like
SwissprotQ8RYD31e-144Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A0D3CL500.0A0A0D3CL50_BRAOL; Uncharacterized protein (Fragment)
STRINGBra034828.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-143B3 family protein