PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638773.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 319aa    MW: 35384.4 Da    PI: 7.7635
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.42.2e-3384204289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl++ak++i+el+ ++ s+++++  ++++   + s++  +      
  XP_013638773.1  84 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGLDQPSKAVDWLLNAAKEEIDELPPLPVSPETFSlfNHHQAFLNLSQPPGQdstqlg 178
                     689*************************************************************7777766655555555555533333334455 PP

             TCP  89 .........................k 89 
                                              +
  XP_013638773.1 179 fktngcveesntttsreetnnnhigS 204
                     55544443221111111111112221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.74886144IPR017887Transcription factor TCP subgroup
PfamPF036347.5E-3086207IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTVQTQELNT SVMNTGPWRD ANDDVSGGTR TRRIVEEDSE EAVVVAVATS GKPVIKKPPT  60
SISSSSSSWM KSKDPRIVRV SRAFGGKDRH SKVCTLRGLR DRRVRLSVPT AIQLYDLQER  120
LGLDQPSKAV DWLLNAAKEE IDELPPLPVS PETFSLFNHH QAFLNLSQPP GQDSTQLGFK  180
TNGCVEESNT TTSREETNNN HIGSYGTYQN MEQHQQQHTR FQADYPHHQH QLHSLVPIQS  240
QFLVCPMTAS STTTTIQSLF PSSSSAGSRT METTDPRQMV SHFQMPSMGS SSSSQNISTL  300
YSLLHGGSNP MPSVQFNRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1991145155Putative transcription factor PCF6
5zkt_B6e-1991145155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324590.0AC232459.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB020F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638773.10.0PREDICTED: transcription factor TCP13 isoform X1
SwissprotQ9S7W51e-152TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A0D3CNA70.0A0A0D3CNA7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ERH90.0A0A3P6ERH9_BRAOL; Uncharacterized protein (Fragment)
STRINGBo5g152840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-118plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]