PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637295.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 270aa    MW: 29400.6 Da    PI: 8.356
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-067398126
                    --S---SGGGGTS--TTTT.T-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGd.rCkFaHg 26
                    +kt+lC++f++ G C+y + +C+FaH+
  XP_013637295.1 73 FKTKLCCNFRA-GSCPYVAsTCHFAHS 98
                    69*********.*****9637*****7 PP

2zf-CCCH17.57.5e-06114139126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f  +  C+yG++C+F H+
  XP_013637295.1 114 YKGRHCKKFNSGEGCPYGESCTFLHD 139
                     7778899999966************7 PP

3zf-CCCH38.91.4e-12168193126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C+ +  +G+C++G +C+FaHg
  XP_013637295.1 168 WKTRMCNKWEMSGYCPFGTNCRFAHG 193
                     8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-1370105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-571104IPR000571Zinc finger, CCCH-type
SMARTSM003560.0197299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.98672100IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-47398IPR000571Zinc finger, CCCH-type
SMARTSM003560.031113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-7113140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859113141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-9114140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-16165197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-10166198IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7167194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432167195IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8168193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSHRRDSTTD AVHVIPTNDP PPENPFPSPV WASTEDDYSR VSAANNDETE SPCKKTRGSP  60
SSSSSSEIGK AFFKTKLCCN FRAGSCPYVA STCHFAHSAE ELRRPTAGES VRPYKGRHCK  120
KFNSGEGCPY GESCTFLHDE ASRNREGFAV SLGHRGGGNV VAAASPNWKT RMCNKWEMSG  180
YCPFGTNCRF AHGASELHRF GGGLVEEEEG KIGTSSTLDT KKTGQASLAS PGVRTSNAVT  240
QKPNGVRVVR KWKGPDRISR VYGDWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9535560.0EU953556.1 Zea mays clone 1434304 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637293.10.0PREDICTED: zinc finger CCCH domain-containing protein 28
RefseqXP_013637294.10.0PREDICTED: zinc finger CCCH domain-containing protein 28
RefseqXP_013637295.10.0PREDICTED: zinc finger CCCH domain-containing protein 28
SwissprotQ5PP651e-100C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A0D3BRW70.0A0A0D3BRW7_BRAOL; Uncharacterized protein
STRINGBra005342.1-P1e-159(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.15e-91C3H family protein