PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637217.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 624aa    MW: 68206.2 Da    PI: 8.2082
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07152172526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ffa+ G C  G++C+F H+
  XP_013637217.1 152 PCKFFAQ-GRCTKGNSCRFLHV 172
                     7******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.88E-6147171IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043147173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76147174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5152173IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4152172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MSDSDMEIDD DELQVHVQPT VAGESRLLAR PIEASNSQND VKKHSDEQLK IINGNLQPNL  60
SGNSGKNPIL EGEKGIILPS LRFPAPGQSF PLVNGPEQTK IINGYLQPNL SGSSGKKLML  120
EGEKDTVLSR FPAPVQSLPP ANGPEQKRPA YPCKFFAQGR CTKGNSCRFL HVNENMNRTS  180
QQQVVNNMAG TSGIQSIEER RPLESKEGVR FPMLSTNGVT SLVNPPAGQR VFPFTNEMRF  240
MPSLENMGRG SLQKCGAVFT ENRPVFGNST SSFPLRSIFV QEHGSFITSN RQTDMGSSGP  300
AWTGSVFSSA PLNQYASPFG NFENRNDKNG SGSLPMEQAL SVPSVQDAEV DTTSDKKEVS  360
SNDWEPSELF RPSFTIPPYI LPSSDALYDP FTDIENPEDK SPKAQSSTKG KDAQKKSGQQ  420
KDGDSASNDK NSSCSQNQFQ ETVVRKNLEA HGVVEGVATS VVDQNDASAT TPSKEISSSA  480
AVENRAVLKR SKPAGHESWH RSDGSSHQKK LKTDEMDGEV RSDAGTKVMR QFRTAVVETI  540
KDMLKPLWRE GRLSKDVHNM IVKRATEKIV GAAVQLHQVP TNNESVEKYL SMSSTRIVKL  600
VEGYVEKYGK PQSKPSGIIK SKAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637217.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A0D3BSB90.0A0A0D3BSB9_BRAOL; Uncharacterized protein
STRINGBra005468.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein