PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637169.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 795aa    MW: 90331.5 Da    PI: 6.7538
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.98.4e-2459145291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+eYA++vGF +++++s++skr+g++++ +  Cs+ g+++e++ +     ++r+  +tgCka l++k+++d+kw++ ++++eHnHe++p
  XP_013637169.1  59 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKRESTAA---IVNPRSCPKTGCKAGLHMKRKEDEKWVIVSFVKEHNHEISP 145
                     9***************************************999877...99************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2159145IPR004330FAR1 DNA binding domain
PfamPF105511.2E-21229321IPR018289MULE transposase domain
PROSITE profilePS509669.878506542IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-6506539IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-6517544IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MDVEGVAIDL LSRNGANVDE PCEASTSGNA TSSTLENFAT VGEPINGMEF ESKEAAYYFY  60
REYARSVGFG ITIKASRRSK RSGKFIDVKI ACSRFGTKRE STAAIVNPRS CPKTGCKAGL  120
HMKRKEDEKW VIVSFVKEHN HEISPDDYYA SVRGKNKPPV GASAHQKKGL QLALEEDDFK  180
LMLERFAEMQ SKQPGFFYAV DFDSEKRIRN VFWLDVKAKQ DYYSFSDAVH FDTFYVRSGY  240
RVPFAPFVGV NHHRRYALLG CALIGEESES AYSWLFRTWR KAVGGGQAPG VMITDQDKVL  300
SDVVAEVFPT ARHCFSLWSV VSKVPEMVNP LDDGFTECFR DCVDGAWTDE QFERSWSEMV  360
GKFELNENEW LHSLFRDRKK WVPRYFHGLS FAGLSGPERS GSVVSHFDKY MNSEATFNEF  420
FELYTKFLQY RYDVEAKDDL DSQSKEPTLR SSLAFEKQLS LIYTDAAFKK FQTEVLGVVS  480
CQLQKEREDE TTAIFRVEDF EKRRNFFVSV KKEVLDVCCS CYLFEYQGFL CKHAMLVLQN  540
SDVSCVPSQY ILKRWSKKGN NREEKHEEGA AVDNRMSRFD DLCKRFVKLG EVASLSDEAY  600
KTALQFLGKN LKRCVRLNNS SKFPSEPGLE NEGTLDCASK LSRKKKTQKK RKAYNGPEDV  660
TNGSEELRQE PEQVSSRAPT FENCYIPQAA DMEATELGSR AAPLGMYYST QQTIGFSSVS  720
SVQDGYYYGH PATIQAMGNL HSVHGRMNQY ETQPSIQGAF QGQSAIRGCY DMEETLQDMF  780
HGSGPSHPGD HRLSH
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637169.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621581.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
RefseqXP_013621583.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
RefseqXP_013621584.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
RefseqXP_013637168.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
RefseqXP_013637169.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
RefseqXP_013637170.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
SwissprotQ3EBQ30.0FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A0D3BSR60.0A0A0D3BSR6_BRAOL; Uncharacterized protein
STRINGBo4g045820.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.30.0FAR1-related sequence 2
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]