PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635637.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 139aa    MW: 15919.7 Da    PI: 8.4669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122042123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C + Fs+   L  H++ H
  XP_013635637.1 20 YICEFCERGFSNAQALGGHMNIH 42
                    89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-71746No hitNo description
Gene3DG3DSA:3.30.160.603.2E-61746IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.242047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MNRKYSDRRS YSWSGQARPY ICEFCERGFS NAQALGGHMN IHRKDRAKLR QANLKEDDRE  60
DSTCTTSRNR FEQDLTELPF FVDSTVGSST KQDKNTSGDY LGGEEKKMMK LQNALSHSAE  120
VIDLELRLGL DPYKKSPST
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635637.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635637.11e-101PREDICTED: transcriptional regulator TAC1
TrEMBLA0A078JQT11e-100A0A078JQT1_BRANA; BnaC04g55680D protein
TrEMBLA0A0D3BY951e-100A0A0D3BY95_BRAOL; Uncharacterized protein
STRINGBo4g120550.11e-101(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-75C2H2 family protein