PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635599.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 274aa    MW: 31456.7 Da    PI: 4.5374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08166210655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  XP_013635599.1 166 SIAARERRRRIADKTQELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 210
                     577899*****************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-10158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.309160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-10163219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-8166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5166210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-4181213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSSMDCLSHF FNWDQPIQLQ DCFIPDMDMI IPETASFFFQ SQPQLQFDQP LFQEEAPSQR  60
LLELTHFDAF CDQFLPSQEI FLPYPKAETF DESHNMDSLL PTSKRQKLFN SSYHWNTHNH  120
FPSPNIDFVP EAFIFPEFTV PDFPLVFEAG RGDQESTKKP TLSSQSIAAR ERRRRIADKT  180
QELTKLIPGG QKLNTAEMFQ AAAKYVKFLQ SQVGILQMMQ TAKKTQGISD AEIETQVLLG  240
SQAIQEKLST EEVCLVPCQM VRELTSEESI LEKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635599.10.0PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD01e-129BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A0D3C4750.0A0A0D3C475_BRAOL; Uncharacterized protein
STRINGBo4g182930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-116bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]