PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635245.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 370aa    MW: 41623.3 Da    PI: 7.1861
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05210229120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_013635245.1 210 FSCPVCFKTFNRYNNMQMHM 229
                     89*****************9 PP

2zf-C2H214.40.00011294316123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_013635245.1 294 FMCRKCGKAFAVRGDWRTHEKNC 316
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38210232IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-6210229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-6276314No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5290314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549294314IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808294314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MADPYSNFFN GWFKPNPFHN YLNSSSNPSS PPPPPPPSSF FLIPHPGDLR RPPPTRPPSP  60
PLREALPLLS LSPVNKQQNY HHDLIQEPPS TSMDVDYGHQ HHQVDHNLDE DDHDVTVSLS  120
IGLPSPSTRD MASLLMLSSS SSSSRTTNHH ENINDKKDPD NDYYHGSAGG GEDDDEDSAG  180
GDGGCRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW GHGSQYRKGP  240
ESLRGTQPTG MLRLPCYCCS PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG  300
KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHGAYGI DGFDEEDEPA  360
SEVEQLDNDQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635245.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D3BX840.0A0A0D3BX84_BRAOL; Uncharacterized protein
STRINGBo4g111000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-177C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]