PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634677.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 211aa    MW: 23133.9 Da    PI: 8.7539
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.53.4e-3242173489
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......... 88 
                     +++++++ h kv+gR+RRvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a ++ + s++s+ +               
  XP_013634677.1  42 QTKSSKDGHLKVEGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLRHAEPSIISATGTGIKPAADSVSRSQVSN-G----Fwanetgfgiv 131
                     67899*********************************************************9999955522222222.1....01222334555 PP

             TCP  89 .........................................k 89 
                                                               
  XP_013634677.1 132 ganptgggldlncgigflgfdfngssdmgfennqmpqvgmwG 173
                     555555555555555566666555555555555555555551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-2545200IPR005333Transcription factor, TCP
PROSITE profilePS5136924.63246100IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDPKNPPNLL NPEAEVKVLN NTVEGKSKWK QKEKGKQGRE IQTKSSKDGH LKVEGRGRRV  60
RLPPLCAARI FQLTRELGHK SDGETLQWLL RHAEPSIISA TGTGIKPAAD SVSRSQVSNG  120
FWANETGFGI VGANPTGGGL DLNCGIGFLG FDFNGSSDMG FENNQMPQVG MWGVLNPQIY  180
QQMGQEQAKV LQHHHHHPHE AQQENADKQG S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634677.11e-156PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP6
SwissprotQ9FLM62e-61TCP6_ARATH; Transcription factor TCP6
TrEMBLA0A078J9871e-139A0A078J987_BRANA; BnaC01g43000D protein
STRINGBo4g140760.11e-122(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.13e-59TCP family protein
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]