PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634474.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 235aa    MW: 25907.7 Da    PI: 5.1179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19104154255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ +l+g
  XP_013634474.1 104 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 154
                     59*******.***********9998..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.63E-30104164No hitNo description
SMARTSM003803.7E-36104168IPR001471AP2/ERF domain
PROSITE profilePS5103223.907104162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-32104163IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23104163IPR016177DNA-binding domain
PRINTSPR003674.7E-13105116IPR001471AP2/ERF domain
PfamPF008478.9E-13105154IPR001471AP2/ERF domain
PRINTSPR003674.7E-13144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSGFDYNDLT NSADSVTNGV NPPVFYRNPS FSNVILNDSW SDLPLSVDDS QDMAIYNTLR  60
DAFSSGWTPA VPPPVVAEEV KPTTATATAA ASGSRPAARQ KGMQYRGVRR RPWGKFAAEI  120
RDPKKNGARV WLGTYETPED AAVAYDRAAF QLKGSKAKLN FPHLIGTCEY EPVRIRPRRR  180
SPEPSVSDYS SPEQKSVGHV EEGESSFVVP ELGFTVDQLY SDGGYLMDQS GYSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31101169270ATERF1
3gcc_A2e-31101169270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634474.11e-174PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-124ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0D3C6A91e-174A0A0D3C6A9_BRAOL; Uncharacterized protein
STRINGBra037630.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-102ethylene-responsive element binding factor 13