PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633974.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 320aa    MW: 36546.1 Da    PI: 8.9488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.62.9e-2941145199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                     f+kv tpsdv+k++rlv+pk++ae++      +++++++  l +ed+ g  W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  + +
  XP_013633974.1  41 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnnSSDNNKGLLLNFEDRIGILWSFRYSYWNSSQSYVITKGWSRFVKDKKLDAGDIVSFHRG-ScN 134
                     89****************************99666678899************************************************65.447 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ + r+
  XP_013633974.1 135 KDKLFIDWKRR 145
                     88888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-4132151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-3138148IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-2439130No hitNo description
PfamPF023627.9E-2741145IPR003340B3 DNA binding domain
PROSITE profilePS5086313.33841146IPR003340B3 DNA binding domain
SMARTSM010191.1E-2141146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MERKSNDLER SENIESQNKK MNIEEESPVQ ETSSMEREHM FDKVVTPSDV GKLNRLVIPK  60
QHAERYFPLD NNSSDNNKGL LLNFEDRIGI LWSFRYSYWN SSQSYVITKG WSRFVKDKKL  120
DAGDIVSFHR GSCNKDKLFI DWKRRPKIPD HQVVGVMFPR FYSYPYPQMQ ASYERHNLYH  180
RYQRDIGIGY YVRSMERYDP TAVIESVPVI MQRRAHMATM ASSRRDKRLR LFGVDIECGR  240
GGRGGGGSVN STEEESSTSG GSISRGGVSM AGVGSLLQLR LVSSDGDDQS LVAMGAARVD  300
EDHHLFTKKG NSSLCFDLDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-443814511117DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240246GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633974.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
RefseqXP_013690509.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2681e-157NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A0D3BWC50.0A0A0D3BWC5_BRAOL; Uncharacterized protein
STRINGBra014415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-145B3 family protein