PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633750.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 407aa MW: 46557.9 Da PI: 4.3698

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	91.5	9.5e-29	75	169	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++ w+++De+++L ++d++++t+ s +d+dafy +vk+ i+ ++sk+ql++Kir+L k+f +++++ ++++ psf+ ++d+ if+ls +iW+ XP_013633750.1 75 NKMNWTKDDELIILGSIVDYEKETKLSHRSDWDAFYGYVKDFIEPDFSKKQLTDKIRNLNKRFLGNKARCDDEEGPSFTDTEDDIIFKLSVIIWD 169 5799******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-22	77	169	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MKIRVFSLPQ PKFRSLIHRN QMALGKRTRD YDSNDKPISS SPLRRMQEDD ASGMESMLRR 60 RKQPKTTPVS SSSNNKMNWT KDDELIILGS IVDYEKETKL SHRSDWDAFY GYVKDFIEPD 120 FSKKQLTDKI RNLNKRFLGN KARCDDEEGP SFTDTEDDII FKLSVIIWDS TNETGCASDE 180 NVDQAKDVPC VENEPVDENM DPAKDLPCVE DERVDENVDQ AKALDLDKDA PCVERERVNE 240 NMDLDQEKDV PCVEHELVNE NMDQEQAVLC TGDEPMSNAS IETDKGEKDG VDEFCALKDA 300 LTDKEEKEKS TEDVGDELCA MKDALTDKEK SEDVYCALKD ALEETTFFQS IGKYQQKVLL 360 QNLKNLRGTR RKELADELKE LLNEEMKVRA KKLSLTAKLA SAWEESC

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MKIRVFSLPQ PKFRSLIHRN QMALGKRTRD YDSNDKPISS SPLRRMQEDD ASGMESMLRR  60
RKQPKTTPVS SSSNNKMNWT KDDELIILGS IVDYEKETKL SHRSDWDAFY GYVKDFIEPD  120
FSKKQLTDKI RNLNKRFLGN KARCDDEEGP SFTDTEDDII FKLSVIIWDS TNETGCASDE  180
NVDQAKDVPC VENEPVDENM DPAKDLPCVE DERVDENVDQ AKALDLDKDA PCVERERVNE  240
NMDLDQEKDV PCVEHELVNE NMDQEQAVLC TGDEPMSNAS IETDKGEKDG VDEFCALKDA  300
LTDKEEKEKS TEDVGDELCA MKDALTDKEK SEDVYCALKD ALEETTFFQS IGKYQQKVLL  360
QNLKNLRGTR RKELADELKE LLNEEMKVRA KKLSLTAKLA SAWEESC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633750.1	0.0	PREDICTED: uncharacterized protein LOC106339475 isoform X2
TrEMBL	A0A0D3C4K2	0.0	A0A0D3C4K2_BRAOL; Uncharacterized protein
STRING	Bra017244.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	5e-69	DNA-binding storekeeper protein-related transcriptional regulator