PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633749.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 408aa    MW: 46657.1 Da    PI: 4.3698
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.59.5e-2975169397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      ++ w+++De+++L  ++d++++t+ s  +d+dafy +vk+ i+ ++sk+ql++Kir+L k+f +++++ ++++ psf+ ++d+ if+ls +iW+
  XP_013633749.1  75 NKMNWTKDDELIILGSIVDYEKETKLSHRSDWDAFYGYVKDFIEPDFSKKQLTDKIRNLNKRFLGNKARCDDEEGPSFTDTEDDIIFKLSVIIWD 169
                     5799******************************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-2277169IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MKIRVFSLPQ PKFRSLIHRN QMALGKRTRD YDSNDKPISS SPLRRMQEDD ASGMESMLRR  60
RKQPKTTPVS SSSNNKMNWT KDDELIILGS IVDYEKETKL SHRSDWDAFY GYVKDFIEPD  120
FSKKQLTDKI RNLNKRFLGN KARCDDEEGP SFTDTEDDII FKLSVIIWDS TNETGCASDE  180
NVDQAKDVPC VENEPVDENM DPAKVDLPCV EDERVDENVD QAKALDLDKD APCVERERVN  240
ENMDLDQEKD VPCVEHELVN ENMDQEQAVL CTGDEPMSNA SIETDKGEKD GVDEFCALKD  300
ALTDKEEKEK STEDVGDELC AMKDALTDKE KSEDVYCALK DALEETTFFQ SIGKYQQKVL  360
LQNLKNLRGT RRKELADELK ELLNEEMKVR AKKLSLTAKL ASAWEESC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633749.10.0PREDICTED: uncharacterized protein LOC106339475 isoform X1
TrEMBLA0A0D3C4K20.0A0A0D3C4K2_BRAOL; Uncharacterized protein
STRINGBra017244.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.13e-68DNA-binding storekeeper protein-related transcriptional regulator